Plot a Venn diagram
venn.RdPlot a Venn diagrams for up to 5 sets
venn(data, universe=NA, small=0.7, showSetLogicLabel=FALSE, simplify=FALSE, show.plot=TRUE, intersections=TRUE, names, ...) # S3 method for venn plot(x, y, ..., small=0.7, showSetLogicLabel=FALSE, simplify=FALSE)
Arguments
| data,x | Either a list list containing vectors of names or indices of group intersections, or a data frame containing boolean indicators of group intersectionship (see below) |
|---|---|
| universe | Subset of valid name/index elements. Values ignore values
in codedata not in this list will be ignored. Use |
| small | Character scaling of the smallest group counts |
| showSetLogicLabel | Logical flag indicating whether the internal group label should be displayed |
| simplify | Logical flag indicating whether unobserved groups should be omitted. |
| show.plot | Logical flag indicating whether the plot should be displayed. If false, simply returns the group count matrix. |
| intersections | Logical flag indicating if the returned object should have the attribute "individuals.in.intersections" featuring for every set a list of individuals that are assigned to it. |
| y | Ignored |
| ... | Optional graphical parameters. |
| names | Optional vector of group names. |
Details
data should be either a named list of vectors containing
character string names ("GeneAABBB", "GeneBBBCY", .., "GeneXXZZ") or
indexes of group intersections (1, 2, .., N), or a data frame containing
indicator variables (TRUE, FALSE, TRUE, ..) for group intersectionship.
Group names will be taken from the component list element or column
names.
Value
Invisibly returns an object of class "venn", containing:
A matrix of all possible sets of groups, and the observed count of items belonging to each The fist column contains observed counts, subsequent columns contain 0-1 indicators of group intersectionship.
If
intersections=TRUE, the attributeintersectionswill be a list of vectors containing the names of the elements belonging to each subset.
Examples
## ## Example using a list of item names belonging to the ## specified group. ## ## construct some fake gene names.. oneName <- function() paste(sample(LETTERS,5,replace=TRUE),collapse="") geneNames <- replicate(1000, oneName()) ## GroupA <- sample(geneNames, 400, replace=FALSE) GroupB <- sample(geneNames, 750, replace=FALSE) GroupC <- sample(geneNames, 250, replace=FALSE) GroupD <- sample(geneNames, 300, replace=FALSE) input <-list(GroupA,GroupB,GroupC,GroupD) input#> [[1]] #> [1] "YMIII" "TGRSB" "EDQGT" "PJDAK" "JSWWK" "UYLOB" "YERZG" "RIOLM" "DLXKU" #> [10] "VTDFY" "RMAEP" "VBTNM" "SHIPQ" "VXQWD" "JQKSZ" "JJKNI" "QPMWC" "QQAJB" #> [19] "XTRKL" "EEGGG" "FSGGO" "UHDMH" "QGTDI" "AXDMY" "UCCWI" "FFNWH" "XNMLQ" #> [28] "GZQZM" "JBXRU" "QBCLV" "EDSRI" "FSFWT" "VQLTJ" "HPMVK" "EXHLU" "IJJRE" #> [37] "PEQCJ" "CTXQJ" "UEWSV" "ATLMY" "WKUPX" "CPFTV" "FQPYR" "RILGB" "DKHEL" #> [46] "JCIDI" "SBIEA" "MMQSM" "FHWLJ" "VYNOG" "YMCMZ" "RLPYL" "BLBGS" "QIVKH" #> [55] "IKKZA" "WNCBJ" "GTHER" "RXWMV" "OGBDE" "AHDRZ" "CMTPQ" "ADVQM" "LAPDM" #> [64] "ZFQSC" "ZFSGS" "NTSKM" "XEIML" "NLCGE" "NRKXT" "FRWGN" "EDVLI" "OHKPP" #> [73] "DEJXH" "CAEPI" "NUGIR" "CTQAH" "THFVD" "YGHYR" "NJTFO" "ELGUI" "VKNMJ" #> [82] "QCQYM" "NJAAF" "MGYFU" "SSQMS" "ZLSYT" "XFRMN" "CQFRD" "OGJBW" "NOVTT" #> [91] "VALVS" "VEUTP" "BPYQN" "DTUNJ" "MYOHQ" "YTLNJ" "IMKMQ" "ZZEFR" "LSGRC" #> [100] "ILCPG" "XLRET" "TQGJB" "OPZDH" "XEUKR" "QLIDJ" "DEJHX" "SMXKI" "LPUDQ" #> [109] "JTHVY" "IITIH" "VTTWS" "DZESC" "XRWLY" "EETXA" "TILQM" "DEVMB" "MILSE" #> [118] "JGOFD" "LKPNQ" "GNADE" "VLYNP" "AZZNR" "BQPMG" "GBZRN" "WSWRG" "ZZNBK" #> [127] "MSOYN" "REHJC" "FLVAN" "BOEWQ" "REPUE" "ZYNUB" "CAFSA" "PNFVW" "YZEGX" #> [136] "VFMUP" "OBEEH" "GVSWW" "QBATS" "FJIDR" "NQFKN" "XBHHA" "ZULKL" "SLTBK" #> [145] "UGEQR" "XLAZZ" "HVVJY" "EXADT" "YXLER" "RGKIA" "RWCFT" "KJQIL" "TDKDI" #> [154] "HUYMF" "NDLWN" "QUIYZ" "RWQRC" "VRCUY" "WVEAX" "LOXNJ" "KFQEN" "KWSVW" #> [163] "SWCZP" "BLQZQ" "NDIUI" "GFJIZ" "PKSFY" "GJMOI" "HXKMK" "AHKEN" "VKIZK" #> [172] "DWCPR" "SAJSX" "LDVDJ" "OYLFM" "TWLSW" "HWLNL" "PMRKN" "UUABD" "LGEZW" #> [181] "WMDQQ" "TRVNP" "NDRUX" "XJMPD" "NNHTV" "CQIMT" "EBETB" "NSKHG" "TUFEN" #> [190] "HBCKT" "CQCXI" "MSBLF" "AKDQI" "MTFZZ" "KLUNS" "ZUUYV" "FPCEU" "FTQQY" #> [199] "IIMDF" "PUFUS" "RUQLK" "GSSQG" "KIUTG" "SECSL" "NTEPI" "AVBXA" "ARPIW" #> [208] "NFRZT" "ZLXCO" "AWAOB" "CFUVR" "SIMFZ" "FHNTU" "PRTPE" "ENYGM" "YBBNB" #> [217] "XKVWP" "IIXXE" "VSVKU" "GCCNI" "DQAQJ" "CHHZV" "ZFZFA" "TIHWF" "FBVKW" #> [226] "XGTPM" "LMZAH" "CAQVR" "LUYHW" "HFGFP" "DCKWJ" "UPMLR" "RGCQE" "QURGV" #> [235] "OKSVU" "RFYGE" "BBMST" "NHOZP" "QDPNF" "NQCQW" "KPZES" "WYGZV" "TQZGP" #> [244] "TKAEU" "XSCCN" "RGUOJ" "FSQSO" "NFSGU" "PIBAW" "VVNNS" "NQKHR" "CAWDQ" #> [253] "BUWLA" "MUYCQ" "TVYYJ" "YYBEN" "CYXUZ" "ZVMPS" "GLOQV" "TXMHX" "MELKZ" #> [262] "TVUKT" "ABUCB" "DVSVN" "YSRVC" "AQWMD" "ACHTF" "OEFPV" "YAVVE" "ASMJV" #> [271] "TFSET" "JETOX" "FTIPT" "BOAWV" "XIOEJ" "GWWLE" "JBVGX" "BDLQC" "HWFUN" #> [280] "QHANP" "LSJDC" "VBSCC" "ABEMT" "UGDLC" "XQCFD" "TPUBB" "AECDH" "TOFMJ" #> [289] "QZHIM" "UGTLY" "YZJRC" "MJIEP" "CDHIU" "RHCYI" "QQIXI" "NSRJR" "OKOFY" #> [298] "JMLIJ" "DIUCE" "SQZXR" "WBFWJ" "ZCEQT" "FQTJD" "PKMTY" "REGHA" "TSZEW" #> [307] "CNIGR" "HWFMB" "IQLDM" "QGZJS" "RLCTQ" "CASZE" "EEKPP" "NDVLC" "BPQZG" #> [316] "KAPCQ" "PESCC" "IKZUW" "ZGZGI" "VOJBR" "ZWTTH" "PSIUX" "RKQRB" "XUOUB" #> [325] "JUOBX" "DUKGW" "WAICA" "XODZH" "KMQCB" "BUSUE" "KNMST" "FWEPE" "MTLXT" #> [334] "NTTIS" "LTWFM" "EFGQT" "CNWHB" "NXDPR" "DBENV" "NNQKY" "LIDPN" "CVRZH" #> [343] "PHGRU" "YLKRA" "TCUQK" "JDTNH" "JPMVL" "RTOTK" "UURZW" "IDUGD" "TMRSS" #> [352] "PCSXL" "XMLCQ" "VFDLE" "LKHAF" "CTTEQ" "BHZPH" "PEGKE" "EWTBX" "OINFR" #> [361] "KYRJQ" "LBLJX" "SGPJB" "UPYMG" "YKRMH" "VEWNH" "DPURT" "QBOOQ" "SRVEG" #> [370] "PHWGC" "PURYK" "UKZTO" "JFXKH" "BSOVT" "GHFFA" "VKYIE" "GGCEX" "XTDCZ" #> [379] "MRIGY" "XEFBQ" "TCCXT" "ELCJJ" "MKQSV" "BUMEC" "ULCKN" "LFYLT" "LZQQQ" #> [388] "OOFAL" "IRBGU" "LODJK" "JYTWP" "RBMMS" "GFYZG" "KWBFR" "XLHWL" "KJXHG" #> [397] "IMGXL" "XDIPD" "RVXBP" "MGPFN" #> #> [[2]] #> [1] "FXVQY" "QBOOQ" "AORUB" "PPYOH" "JIFKL" "SUHYR" "VSVKU" "HIAQL" "UPYMG" #> [10] "OFCZV" "KYRJQ" "VOJBR" "CZQBG" "RVVZD" "VLFGJ" "XMVVN" "OIEYP" "TRJRB" #> [19] "PJDAK" "CAWDQ" "UGTLY" "XTDCZ" "GWGPA" "WFMVD" "EUCTP" "ZULKL" "MBZRN" #> [28] "EKUYW" "BNPBF" "QOHIZ" "QZHIM" "VBSCC" "LDVDJ" "QGNEQ" "JMLGP" "GJMOI" #> [37] "XCNMA" "UXDGX" "DWCPR" "OKKFP" "GLOQV" "PXEPS" "TNEZM" "WOUJH" "ABUCB" #> [46] "RSAVL" "EIEMM" "ASQJQ" "CYSVI" "AFHPT" "LGMZK" "EAHUB" "JJKNI" "IIMDF" #> [55] "KFRHL" "OUAVE" "TXMHX" "MMQSM" "GVOQL" "NTTAV" "NZADX" "PKNFK" "TIHWF" #> [64] "MSBLF" "JZQCZ" "LYYBV" "KLUNS" "OGJBW" "CVRZH" "YMIII" "KJHEO" "DZESC" #> [73] "XZGEN" "QAGKJ" "ZBDZX" "NQCQW" "GFJIZ" "FEOJA" "CQCXI" "BRHKR" "PSZIE" #> [82] "LZNOY" "PAYBP" "DJLHU" "DATCW" "IKKZA" "CVHIX" "FUGRT" "JJVZS" "UPSEF" #> [91] "OBLUC" "GNADE" "GQOWT" "SZOUJ" "THFVD" "TVXFM" "FCQYQ" "VNWVW" "MSOYN" #> [100] "UOFIO" "ONATZ" "OCWEK" "RFYJH" "VXQWD" "CXUZH" "ZFZFA" "DRXHH" "YZCRQ" #> [109] "ANXQH" "TOFMJ" "BXCSG" "HOGTN" "TILQM" "PJCDV" "FIWCF" "ECCFP" "SCPLR" #> [118] "KRZUH" "LNNKZ" "XCCXU" "BPQZG" "XUOUB" "VXXYJ" "YYGCY" "AHJEA" "CILHD" #> [127] "WJOEZ" "XEUKR" "MGYFU" "FPCEU" "GVSWW" "HMWMO" "ZBUCK" "KTPUX" "JJNZB" #> [136] "MANBN" "SABYO" "SPAIS" "QCDQO" "RMAEP" "REPUE" "BZQPN" "EUMIW" "ZHWZB" #> [145] "DVSVN" "YBYXE" "BADKD" "JRDPA" "NNITQ" "AWAOB" "JDTNH" "YXVYY" "HTDIJ" #> [154] "BUMEC" "WVEAX" "YSRVC" "GBZRN" "ZNPHZ" "MSIJK" "GGQQF" "VMYYC" "QCQYM" #> [163] "RQLER" "QDPNF" "JMLIJ" "EANKE" "OKAUH" "JQKSZ" "EXADT" "NUGIR" "RGUOJ" #> [172] "PUFUS" "SOFSM" "REHJC" "EDQGT" "XTSPI" "BUSUE" "YJYTM" "NYTZB" "PULJB" #> [181] "PQXCE" "EBETB" "DUCUP" "RWQRC" "WPODU" "CNWHB" "OEFPV" "ATLMY" "HZHRE" #> [190] "JSWWK" "OHSIB" "KWBFR" "ZLSYT" "NFRZT" "WTIWO" "VPHBR" "VKNMJ" "AKDQI" #> [199] "HBRBU" "FFNWH" "WDKJP" "MWIDH" "PKMTY" "MJIEP" "XEFBQ" "RWCFT" "CENDF" #> [208] "IHTJY" "XPIMA" "TVUKT" "SGAGM" "MGPFN" "IIXXE" "VQGRC" "IMGSX" "NXDPR" #> [217] "CTQAH" "LLOEP" "MANTZ" "OAOBG" "NVZMU" "YQMJC" "WGKSP" "JYGAI" "SSJDC" #> [226] "BJDFG" "NQLUG" "ACHTF" "YAVVE" "XODZH" "KGXCA" "FSQSO" "LRNQE" "WJCFD" #> [235] "MKLKL" "QZQKF" "QGYBK" "AQRRA" "TCUQK" "XJMPD" "KFQEN" "VWKZJ" "UZBWI" #> [244] "VBTNM" "JFXKH" "OOEXB" "KIUTG" "UGEQR" "BMNHB" "THMEW" "VQHER" "JOEHG" #> [253] "CQFRD" "SRVEG" "KRPAE" "XLAZZ" "LOUTU" "MWPJJ" "SMWSN" "YMTXG" "JPMVL" #> [262] "RYSSB" "DEJHX" "LIDPN" "NOGVM" "UJYGF" "EHOZF" "MDPSX" "ZTOBO" "BLQZQ" #> [271] "LKHAF" "CNIGR" "FSFWT" "XCXTQ" "LQODV" "HBCKT" "ANMYA" "QVOSJ" "TGRSB" #> [280] "VXBYG" "ZKXTG" "YYBEN" "QHHJL" "LBLJX" "NMRUD" "QGVPU" "PNFVW" "MKUQK" #> [289] "KGMIP" "PCCRX" "QYSXT" "EFNIB" "HIXMT" "TQZGP" "TDKDI" "QGTDI" "HPMVK" #> [298] "XMLCQ" "QGZJS" "OQWRF" "QUIYZ" "TCCXT" "YMGRW" "VFMUP" "BEXON" "KQCNM" #> [307] "PMJTE" "PEGKE" "XQCFD" "CHHZV" "HLWPY" "GAXSN" "MUPOH" "LKPNQ" "HSNVF" #> [316] "ECBUW" "YERZG" "JZWJF" "BAZUG" "ZUIHY" "XBHHA" "YMCMZ" "GCXHG" "SLPUT" #> [325] "TPUBB" "FTIPT" "JBVGX" "OPZDH" "NLCGE" "SECSL" "OINFR" "LFENA" "JJHYS" #> [334] "AXYCM" "OQATO" "QBATS" "OUSUY" "ZTSKQ" "UXGHW" "XEIML" "EETXA" "NFSGU" #> [343] "RFYGE" "CMTPQ" "PURYK" "AXDMY" "LUIBK" "NBFXV" "FBVKW" "FJIDR" "FQPYR" #> [352] "SFJFI" "MIVAL" "PJYUF" "WAZFP" "NNUXG" "ITROK" "FLVAN" "NWOKR" "BLVKE" #> [361] "EEGGG" "LGEZW" "AHKEN" "NJTFO" "HISPZ" "YHLDV" "DBENV" "WYFRA" "YLIGE" #> [370] "RLPYL" "IJZMQ" "TUFEN" "SOZOK" "QLIDJ" "CCGTT" "GFYPZ" "HNXOK" "YZJRC" #> [379] "MTFZZ" "BUWLA" "RYSVI" "SNAKS" "OHSRN" "DCKWJ" "DQAQJ" "CVNNM" "DEJXH" #> [388] "RJZID" "KGLHU" "XTWSG" "UCNJQ" "IROWO" "FQSSV" "KBSMW" "CFZHA" "MFGMD" #> [397] "PRTPE" "VEWNH" "NSRJR" "VBDEY" "RHCYI" "FPARL" "CDHIU" "TSZEW" "AQWMD" #> [406] "ZGZGI" "EDOEK" "OQNBT" "SKSDX" "OEDTK" "UFFAA" "IMKMQ" "NDLWN" "GSPOT" #> [415] "EAIPH" "UIRPS" "IJJRE" "YNNWY" "IMGXL" "LCVOU" "HTUQZ" "QMALB" "ABEMT" #> [424] "GUBHT" "SJIFG" "KUXDB" "MRTRS" "BUWVX" "VJNKZ" "GMEIS" "MUYCQ" "PCSXL" #> [433] "FUVPX" "NGMXH" "RVJXU" "XLHWL" "TACJD" "FIIDX" "MLZPB" "LEXUS" "JHKBA" #> [442] "LPUDQ" "KNDMB" "KZEMN" "AEBKV" "XNMLQ" "KPZES" "DKHEL" "JZPQG" "ZWTTH" #> [451] "TEBUJ" "VLQGX" "SBIEA" "GWWLE" "PKSFY" "QQHLH" "IEICM" "KPKPJ" "WSWRG" #> [460] "XCBJB" "CDCLI" "NOVTT" "ZVNSS" "YGHYR" "ZFSGS" "MYOHQ" "MVTRS" "IVJSO" #> [469] "LAPDM" "LIQPH" "XRWLY" "GHFFA" "YQPFK" "IOILU" "NDUFF" "JIYDO" "VZQXC" #> [478] "IMMMW" "KIYIF" "ULCKN" "CGJJW" "RBWDD" "UIBXS" "KWSVW" "RBMMS" "KNMST" #> [487] "CJJQS" "KUEEF" "VMWNN" "IXPVR" "SIWMJ" "KMQCB" "EOVJH" "BDLQC" "QANBM" #> [496] "KIEEG" "EDSRI" "BXGZG" "GCCNI" "LZQQQ" "HUMNR" "GDURJ" "SMXHI" "FWEPE" #> [505] "AZGKM" "ZPSNG" "ASCTA" "CGVUY" "DMCLQ" "UUABD" "RUQLK" "HVVJY" "YXLER" #> [514] "ARPIW" "QURGV" "AMQCT" "REGHA" "TDAXO" "CFOLW" "ICUDD" "QYVHD" "DEXEN" #> [523] "CENUC" "JBXRU" "DNMCP" "EXHLU" "HUBNU" "LMADF" "HPQIZ" "OLWSK" "VLYNP" #> [532] "JMHVY" "SQZXR" "OKOFY" "JGLPO" "PEQCJ" "ZZOJE" "EDVLI" "ZLXCO" "HGXHF" #> [541] "CWFIT" "ZDUNX" "FTQQY" "QVIER" "RHYGO" "DQBSD" "APIJB" "PSIUX" "BLBGS" #> [550] "XIMOT" "IXWHA" "FVAJV" "NNOFC" "JNQTO" "ZFQSC" "FKAKN" "PPAJR" "XJFSQ" #> [559] "WMDQQ" "LDXKS" "GMKRS" "XTRKL" "VFDLE" "ANCSV" "GYTQE" "HWFMB" "FSGGO" #> [568] "ALAAW" "CFAOO" "ILMMA" "QHANP" "WCWCY" "SMXKI" "BSOVT" "XBTRL" "CAFSA" #> [577] "TUMDX" "ESLXC" "ASMJV" "BNRNI" "PHGRU" "ELCJJ" "LOXNJ" "VRCUY" "JKXOQ" #> [586] "KONHI" "UDDQN" "JFDES" "QSVYN" "VALVS" "DNWAO" "OSIWO" "LPADU" "AHDRZ" #> [595] "YVESI" "OYXBM" "MRIGY" "FCZKS" "YZEGX" "BQPMG" "IMBEO" "YCLDK" "DTUNJ" #> [604] "KQNCX" "XZYXY" "FGMSY" "CTXQJ" "KPDFM" "MKQSV" "XSCCN" "XGTPM" "BBMST" #> [613] "TRVNP" "VQLTJ" "TMRSS" "FEHPV" "OBEEH" "FKKXU" "UYLOB" "NFIJG" "SIMFZ" #> [622] "JWCVN" "MXKFQ" "FRWGN" "OWIGJ" "RTAQC" "JTHVY" "PBJUZ" "AVAOC" "ZUEHW" #> [631] "DPOFW" "NJAAF" "RVXBP" "MELKZ" "IITIH" "RSBES" "LTWFM" "ANDWR" "NTEPI" #> [640] "KJXHG" "VKYIE" "TBRWY" "GJGPD" "URFHN" "PKVNI" "CAEPI" "OMYAP" "QPMWC" #> [649] "PIBAW" "ILCPG" "EDAJP" "QHZTH" "BMPAP" "WYGZV" "ZWAXW" "XGAIE" "XXEWB" #> [658] "HKDQR" "PIEKJ" "VKIZK" "ZTZQN" "KZXDT" "YBBNB" "OGBDE" "FHNTU" "GVFRN" #> [667] "BWBHM" "XHHGN" "PSENI" "SWCZP" "EZWMZ" "BPYQN" "NWAPA" "UUEZG" "SEPHM" #> [676] "EZFPW" "ZCALK" "PSTDQ" "EVZVY" "TWLSW" "NOTTT" "DVYQK" "CASZE" "MHAST" #> [685] "OOFAL" "XKVWP" "VTTWS" "TCZFY" "ZYNUB" "WFPZM" "AECDH" "IVSAF" "NDVLC" #> [694] "PESCC" "FBYWQ" "RIGEM" "NNPXR" "GMLSK" "NTTIS" "ZCEQT" "VTDFY" "NAAGM" #> [703] "MTLXT" "PXWLG" "QNFRJ" "XFXPW" "GDOEG" "TZADP" "HTMMA" "RKVBZ" "KJQIL" #> [712] "TWYWO" "TKPGE" "UTTHI" "ILKLS" "SHIPQ" "KMLIB" "VEUTP" "BBPBK" "NFLQC" #> [721] "JUOBX" "SSYEZ" "SLTBK" "FXUOM" "BKIAJ" "CYXUZ" "HFGFP" "HXLQP" "NQFKN" #> [730] "YUFBP" "XCMJL" "MVAZY" "DIUCE" "DRRFY" "XVSXL" "OLPXP" "JYTWP" "GFYZG" #> [739] "CPGNC" "LAGHX" "IQLDM" "NICDN" "NHMPB" "BOEOS" "VRZAV" "ZKMWK" "VYNOG" #> [748] "RERWZ" "AHPXC" "JDLBE" #> #> [[3]] #> [1] "NWAPA" "YZCRQ" "XANPQ" "RLGIV" "SJIFG" "UHDMH" "NDIUI" "HUYMF" "PPAJR" #> [10] "PJDAK" "UGTLY" "VRZAV" "VEHVJ" "KRZUH" "WFOEH" "JJVZS" "DGXDI" "UTTHI" #> [19] "XXLXR" "PIEKJ" "OMFNZ" "XTWSG" "ZZEFR" "WJOEZ" "WMDQQ" "LVPBM" "SABYO" #> [28] "LMZAH" "QANBM" "FQTJD" "PTPEB" "MSOYN" "VMNMC" "CQFRD" "KWBFR" "UIBXS" #> [37] "MVAZY" "TOPBW" "CAWDQ" "EFYUO" "FTQQY" "HCOKT" "EHOZF" "EESZJ" "MRIGY" #> [46] "VALVS" "DCKWJ" "CWFIT" "QVOSJ" "NDFRZ" "JZQCZ" "KPDFM" "AZZNR" "SFJFI" #> [55] "MVTRS" "CTXQJ" "BQPMG" "OWIGJ" "CVNNM" "YXVYY" "DEJHX" "XCNMA" "TKSPP" #> [64] "SLPUT" "NNPXR" "QYSXT" "XIMOT" "XNMLQ" "FUGRT" "NICDN" "LIQPH" "ZHWZB" #> [73] "KNMST" "ASMJV" "TDAXO" "OLWSK" "NFRZT" "PHWGC" "ABUCB" "HFGFP" "RLCTQ" #> [82] "WSADN" "XFISS" "AVAOC" "DZQHW" "LDXKS" "JPMVL" "PQXCE" "LRNQE" "NLCGE" #> [91] "KIUTG" "SAJSX" "QSVYN" "PSTDQ" "NBFXV" "ZKXTG" "GFYPZ" "GTHER" "TQZGP" #> [100] "RWQRC" "TILQM" "MRTRS" "RGUOJ" "YZJRC" "URFHN" "TBRWY" "MWIDH" "SSYEZ" #> [109] "HNXOK" "AECDH" "DQAQJ" "BCSJF" "TRVNP" "NNUXG" "OHSIB" "SSJDC" "AHJEA" #> [118] "BNRNI" "UOFIO" "PKMTY" "SIWMJ" "ITROK" "VJNKZ" "BXCSG" "HMWMO" "XMLCQ" #> [127] "YCLDK" "PMRKN" "OQWPE" "JGOFD" "JRDPA" "RGCQE" "XJFSQ" "THFVD" "ZLSYT" #> [136] "MTLXT" "VTDFY" "FLVAN" "VLFGJ" "OEDTK" "GLOQV" "OIEYP" "QUIYZ" "JTHVY" #> [145] "FKSKP" "OKSVU" "RVVZD" "WNKAY" "DTUNJ" "YGFLL" "SHIPQ" "MUASG" "KONHI" #> [154] "MUPOH" "BNPBF" "LRYYN" "METQI" "EVQLX" "FKKXU" "YYBEN" "KRPAE" "NAAGM" #> [163] "QZHIM" "NHHGE" "EIEMM" "RHYGO" "ZUEHW" "RZRBQ" "DQBSD" "TXMHX" "VRCUY" #> [172] "WMSKJ" "XBTRL" "VSVKU" "RKVBZ" "YMTXG" "ZLXCO" "XFXPW" "GBZRN" "JOEHG" #> [181] "QHZTH" "XFRMN" "LPADU" "QAGKJ" "JJHYS" "LOXNJ" "PXEPS" "IJZMQ" "DSNYH" #> [190] "NDRUX" "ZFQSC" "YERZG" "OUSUY" "GVFRN" "ZZNBK" "SGPJB" "KUXDB" "SLTBK" #> [199] "CJJQS" "NKIZL" "LGEZW" "NTTIS" "IMGXL" "PMITG" "OOEXB" "MGYFU" "OQNBT" #> [208] "BDLQC" "GFHEG" "LMADF" "VBDEY" "KJHEO" "RTOTK" "MXKFQ" "NVZMU" "KUEEF" #> [217] "UENSU" "OMYAP" "CENUC" "XZYCL" "GJGPD" "DLXKU" "XCMJL" "GHFFA" "HTDIJ" #> [226] "CAEPI" "NWEMI" "CPGNC" "IIMDF" "MTFZZ" "LAPDM" "TNEZM" "XLRET" "ZUVZX" #> [235] "CHHZV" "LLOEP" "QCQYM" "LAGHX" "EUUJG" "LSJDC" "RHCYI" "TWLSW" "IMBEO" #> [244] "JKXOQ" "EDOEK" "CQDWL" "PEGKE" "CXUZH" "WNCBJ" "RIGEM" #> #> [[4]] #> [1] "JXSLX" "REPUE" "QURGV" "SMWSN" "MXKFQ" "CGVUY" "RHCYI" "GBZRN" "GQANJ" #> [10] "RBMMS" "TXMHX" "JSKLK" "WAICA" "LRNQE" "THMEW" "RTOTK" "DCKWJ" "ESOTI" #> [19] "KMQCB" "LIQPH" "LSJDC" "RVXBP" "ETDVO" "FFNWH" "PIBAW" "JMLGP" "HBRBU" #> [28] "FWEPE" "JUOBX" "BXGZG" "MDPSX" "YYGCY" "WUQME" "CENUC" "HQDOE" "HDGRH" #> [37] "HSNVF" "NQFJX" "RLCTQ" "NOTTT" "CDCLI" "TILQM" "LAPDM" "PTPEB" "JETOX" #> [46] "WOUJH" "TRVNP" "QGZJS" "RGCQE" "AQWMD" "FGLMK" "LKHAF" "VYOJL" "IJWPG" #> [55] "CYSVI" "KSNSW" "PXWLG" "XJMPD" "BBPBK" "LZQQQ" "VEHVJ" "IXPVR" "NDVLC" #> [64] "NBFXV" "WGCRR" "AZGKM" "XKVWP" "EOLQM" "HTUQZ" "CWFIT" "KTPUX" "SIRFE" #> [73] "ENYGM" "XHHGN" "DGXDI" "TDDWL" "BOEOS" "LDVDJ" "QQHLH" "GFJIZ" "FSQSO" #> [82] "BOEWQ" "NFRZT" "IRBGU" "KXNJZ" "XVSXL" "TVXFM" "NNOFC" "CAWDQ" "ZWAXW" #> [91] "UKZTO" "XFISS" "PAIDF" "GWWLE" "EETXA" "HPQIZ" "QMZNA" "JZPQG" "QHHJL" #> [100] "RBWDD" "ELGUI" "NTTAV" "WVJGI" "ZKMWK" "QYVHD" "TDKDI" "HMWMO" "PBJUZ" #> [109] "XVRYM" "PULJB" "CQCXI" "CILHD" "TCZFY" "RLGIV" "ACHTF" "FQPYR" "ZTSKQ" #> [118] "XIMOT" "OKSVU" "FXVQY" "DWCPR" "YCLDK" "FUBDA" "SJIFG" "KXEAA" "CFOLW" #> [127] "EANKE" "BRHKR" "HTMMA" "FIWCF" "WFMVD" "QBOOQ" "WLDPP" "PNIYQ" "AHJEA" #> [136] "KWBFR" "FIIDX" "URFHN" "XGAIE" "LEXUS" "CJJQS" "REGHA" "KJQIL" "OQNBT" #> [145] "VKIZK" "SAJSX" "VJNKZ" "XBHHA" "LYYBV" "LPADU" "UDRJH" "PMJTE" "OWIGJ" #> [154] "CHHZV" "WJOEZ" "LFCDH" "HXLQP" "BUWVX" "QNFRJ" "CCSFB" "NBIHL" "VVZZO" #> [163] "KGLHU" "DQBSD" "NOVTT" "ZFZFA" "VPHBR" "JMHVY" "DJLHU" "AKDQI" "REHJC" #> [172] "LNWZE" "ZZEFR" "NWEMI" "EBETB" "ADVQM" "SQZXR" "KBSMW" "LFENA" "QQAJB" #> [181] "BXCSG" "VKYIE" "ZBDZX" "FEHPV" "IJJRE" "WNKAY" "VTTWS" "VXBYG" "ILKLS" #> [190] "DEVMB" "QCDQO" "SWCZP" "OEDTK" "UENSU" "ANCSV" "MKLKL" "FJIDR" "BKIAJ" #> [199] "LRYYN" "EZFPW" "UJYGF" "NNPXR" "DUCUP" "TWLSW" "YGNDE" "NFIJG" "BUWLA" #> [208] "WZXBY" "VBSCC" "HWFMB" "UOFIO" "FXUOM" "ARPIW" "NYTZB" "JWCVN" "VLYNP" #> [217] "NNQKY" "XZGEN" "FQSSV" "RJZID" "YSRVC" "GTHER" "FKAKN" "BLQZQ" "RWCFT" #> [226] "IDEXK" "OMFNZ" "GYTQE" "MSOYN" "RYSSB" "ZTZQN" "WFOEH" "XIOEJ" "TOFMJ" #> [235] "PMITG" "BNPBF" "JPMVL" "RNDVA" "MVTRS" "CAFSA" "PESCC" "OBLUC" "BLBGS" #> [244] "CFUVR" "TFAFB" "IROWO" "RILGB" "NNITQ" "FKSKP" "RSBQZ" "AECDH" "MTNPQ" #> [253] "QBCLV" "TCUQK" "RSAVL" "RVJXU" "SHIPQ" "AETJY" "WPODU" "SUHYR" "BJLGH" #> [262] "UGDLC" "PCSXL" "UUEZG" "CVRZH" "DNMCP" "DUKGW" "LDXKS" "KPDFM" "QQIXI" #> [271] "ZVNSS" "XMLCQ" "ABEMT" "DPURT" "XTSPI" "BDLQC" "IHTJY" "XLRET" "SSJDC" #> [280] "TBRWY" "FTIPT" "ICUDD" "TSZEW" "VALVS" "KIUTG" "TCCXT" "OKOFY" "NSRJR" #> [289] "TUFEN" "CGJJW" "XRTGH" "MILSE" "FEOJA" "PXEPS" "KLUNS" "GMEIS" "SEPHM" #> [298] "XSCCN" "IMMMW" "HZHRE" #>tmp <- venn(input)#> $A #> [1] "RIOLM" "UCCWI" "GZQZM" "UEWSV" "WKUPX" "CPFTV" "JCIDI" "FHWLJ" "QIVKH" #> [10] "RXWMV" "NTSKM" "NRKXT" "OHKPP" "SSQMS" "YTLNJ" "LSGRC" "TQGJB" "RGKIA" #> [19] "HXKMK" "OYLFM" "HWLNL" "NNHTV" "CQIMT" "NSKHG" "ZUUYV" "GSSQG" "AVBXA" #> [28] "CAQVR" "LUYHW" "UPMLR" "NHOZP" "TKAEU" "VVNNS" "NQKHR" "TVYYJ" "ZVMPS" #> [37] "TFSET" "BOAWV" "HWFUN" "WBFWJ" "EEKPP" "KAPCQ" "IKZUW" "RKQRB" "EFGQT" #> [46] "YLKRA" "UURZW" "IDUGD" "CTTEQ" "BHZPH" "EWTBX" "YKRMH" "GGCEX" "LFYLT" #> [55] "LODJK" "XDIPD" #> #> $B #> [1] "AORUB" "PPYOH" "JIFKL" "HIAQL" "OFCZV" "CZQBG" "XMVVN" "TRJRB" "GWGPA" #> [10] "EUCTP" "MBZRN" "EKUYW" "QOHIZ" "QGNEQ" "UXDGX" "OKKFP" "ASQJQ" "AFHPT" #> [19] "LGMZK" "EAHUB" "KFRHL" "OUAVE" "GVOQL" "NZADX" "PKNFK" "PSZIE" "LZNOY" #> [28] "PAYBP" "DATCW" "CVHIX" "UPSEF" "GQOWT" "SZOUJ" "FCQYQ" "VNWVW" "ONATZ" #> [37] "OCWEK" "RFYJH" "DRXHH" "ANXQH" "HOGTN" "PJCDV" "ECCFP" "SCPLR" "LNNKZ" #> [46] "XCCXU" "VXXYJ" "ZBUCK" "JJNZB" "MANBN" "SPAIS" "BZQPN" "EUMIW" "YBYXE" #> [55] "BADKD" "ZNPHZ" "MSIJK" "GGQQF" "VMYYC" "RQLER" "OKAUH" "SOFSM" "YJYTM" #> [64] "WTIWO" "WDKJP" "CENDF" "XPIMA" "SGAGM" "VQGRC" "IMGSX" "MANTZ" "OAOBG" #> [73] "YQMJC" "WGKSP" "JYGAI" "BJDFG" "NQLUG" "KGXCA" "WJCFD" "QZQKF" "QGYBK" #> [82] "AQRRA" "VWKZJ" "UZBWI" "BMNHB" "VQHER" "LOUTU" "MWPJJ" "NOGVM" "ZTOBO" #> [91] "XCXTQ" "LQODV" "ANMYA" "NMRUD" "QGVPU" "MKUQK" "KGMIP" "PCCRX" "EFNIB" #> [100] "HIXMT" "OQWRF" "YMGRW" "BEXON" "KQCNM" "HLWPY" "GAXSN" "ECBUW" "JZWJF" #> [109] "BAZUG" "ZUIHY" "GCXHG" "AXYCM" "OQATO" "UXGHW" "LUIBK" "MIVAL" "PJYUF" #> [118] "WAZFP" "NWOKR" "BLVKE" "HISPZ" "YHLDV" "WYFRA" "YLIGE" "SOZOK" "CCGTT" #> [127] "RYSVI" "SNAKS" "OHSRN" "UCNJQ" "CFZHA" "MFGMD" "FPARL" "SKSDX" "UFFAA" #> [136] "GSPOT" "EAIPH" "UIRPS" "YNNWY" "LCVOU" "QMALB" "GUBHT" "FUVPX" "NGMXH" #> [145] "TACJD" "MLZPB" "JHKBA" "KNDMB" "KZEMN" "AEBKV" "TEBUJ" "VLQGX" "IEICM" #> [154] "KPKPJ" "XCBJB" "IVJSO" "YQPFK" "IOILU" "NDUFF" "JIYDO" "VZQXC" "KIYIF" #> [163] "VMWNN" "EOVJH" "KIEEG" "HUMNR" "GDURJ" "SMXHI" "ZPSNG" "ASCTA" "DMCLQ" #> [172] "AMQCT" "DEXEN" "HUBNU" "JGLPO" "ZZOJE" "HGXHF" "ZDUNX" "QVIER" "APIJB" #> [181] "IXWHA" "FVAJV" "JNQTO" "GMKRS" "ALAAW" "CFAOO" "ILMMA" "WCWCY" "TUMDX" #> [190] "ESLXC" "UDDQN" "JFDES" "DNWAO" "OSIWO" "YVESI" "OYXBM" "FCZKS" "KQNCX" #> [199] "XZYXY" "FGMSY" "RTAQC" "DPOFW" "RSBES" "ANDWR" "PKVNI" "EDAJP" "BMPAP" #> [208] "XXEWB" "HKDQR" "KZXDT" "BWBHM" "PSENI" "EZWMZ" "ZCALK" "EVZVY" "DVYQK" #> [217] "MHAST" "WFPZM" "IVSAF" "FBYWQ" "GMLSK" "GDOEG" "TZADP" "TWYWO" "TKPGE" #> [226] "KMLIB" "NFLQC" "YUFBP" "DRRFY" "OLPXP" "NHMPB" "RERWZ" "AHPXC" "JDLBE" #> #> $C #> [1] "XANPQ" "XXLXR" "LVPBM" "VMNMC" "TOPBW" "EFYUO" "HCOKT" "EESZJ" "NDFRZ" #> [10] "TKSPP" "WSADN" "DZQHW" "BCSJF" "OQWPE" "YGFLL" "MUASG" "METQI" "EVQLX" #> [19] "NHHGE" "RZRBQ" "WMSKJ" "DSNYH" "NKIZL" "GFHEG" "XZYCL" "ZUVZX" "EUUJG" #> [28] "CQDWL" #> #> $D #> [1] "JXSLX" "GQANJ" "JSKLK" "ESOTI" "ETDVO" "WUQME" "HQDOE" "HDGRH" "NQFJX" #> [10] "FGLMK" "VYOJL" "IJWPG" "KSNSW" "WGCRR" "EOLQM" "SIRFE" "TDDWL" "KXNJZ" #> [19] "PAIDF" "QMZNA" "WVJGI" "XVRYM" "FUBDA" "KXEAA" "WLDPP" "PNIYQ" "UDRJH" #> [28] "LFCDH" "CCSFB" "NBIHL" "VVZZO" "LNWZE" "YGNDE" "WZXBY" "IDEXK" "RNDVA" #> [37] "TFAFB" "RSBQZ" "MTNPQ" "AETJY" "BJLGH" "XRTGH" #> #> $`A:B` #> [1] "YMIII" "TGRSB" "EDQGT" "JSWWK" "UYLOB" "RMAEP" "VBTNM" "VXQWD" "JQKSZ" #> [10] "JJKNI" "QPMWC" "XTRKL" "EEGGG" "FSGGO" "QGTDI" "AXDMY" "JBXRU" "EDSRI" #> [19] "FSFWT" "VQLTJ" "HPMVK" "EXHLU" "PEQCJ" "ATLMY" "DKHEL" "SBIEA" "MMQSM" #> [28] "VYNOG" "YMCMZ" "RLPYL" "IKKZA" "OGBDE" "AHDRZ" "CMTPQ" "ZFSGS" "XEIML" #> [37] "FRWGN" "EDVLI" "DEJXH" "NUGIR" "CTQAH" "YGHYR" "NJTFO" "VKNMJ" "NJAAF" #> [46] "OGJBW" "VEUTP" "BPYQN" "MYOHQ" "IMKMQ" "ILCPG" "OPZDH" "XEUKR" "QLIDJ" #> [55] "SMXKI" "LPUDQ" "IITIH" "DZESC" "XRWLY" "LKPNQ" "GNADE" "WSWRG" "ZYNUB" #> [64] "PNFVW" "YZEGX" "VFMUP" "OBEEH" "GVSWW" "QBATS" "NQFKN" "ZULKL" "UGEQR" #> [73] "XLAZZ" "HVVJY" "EXADT" "YXLER" "NDLWN" "WVEAX" "KFQEN" "KWSVW" "PKSFY" #> [82] "GJMOI" "AHKEN" "UUABD" "HBCKT" "MSBLF" "FPCEU" "PUFUS" "RUQLK" "SECSL" #> [91] "NTEPI" "AWAOB" "SIMFZ" "FHNTU" "PRTPE" "YBBNB" "IIXXE" "GCCNI" "TIHWF" #> [100] "FBVKW" "XGTPM" "RFYGE" "BBMST" "QDPNF" "NQCQW" "KPZES" "WYGZV" "NFSGU" #> [109] "MUYCQ" "CYXUZ" "MELKZ" "TVUKT" "DVSVN" "OEFPV" "YAVVE" "JBVGX" "QHANP" #> [118] "XQCFD" "TPUBB" "MJIEP" "CDHIU" "JMLIJ" "DIUCE" "ZCEQT" "CNIGR" "IQLDM" #> [127] "CASZE" "BPQZG" "ZGZGI" "VOJBR" "ZWTTH" "PSIUX" "XUOUB" "XODZH" "BUSUE" #> [136] "LTWFM" "CNWHB" "NXDPR" "DBENV" "LIDPN" "PHGRU" "JDTNH" "TMRSS" "VFDLE" #> [145] "OINFR" "KYRJQ" "LBLJX" "UPYMG" "VEWNH" "SRVEG" "PURYK" "JFXKH" "BSOVT" #> [154] "XTDCZ" "XEFBQ" "ELCJJ" "MKQSV" "BUMEC" "ULCKN" "OOFAL" "JYTWP" "GFYZG" #> [163] "XLHWL" "KJXHG" "MGPFN" #> #> $`A:C` #> [1] "DLXKU" "UHDMH" "WNCBJ" "XFRMN" "JGOFD" "AZZNR" "ZZNBK" "HUYMF" "NDIUI" #> [10] "PMRKN" "NDRUX" "LMZAH" "FQTJD" "SGPJB" "PHWGC" #> #> $`A:D` #> [1] "QQAJB" "QBCLV" "RILGB" "ADVQM" "ELGUI" "DEVMB" "MILSE" "BOEWQ" "CFUVR" #> [10] "ENYGM" "JETOX" "XIOEJ" "UGDLC" "QQIXI" "DUKGW" "WAICA" "NNQKY" "DPURT" #> [19] "UKZTO" "IRBGU" #> #> $`B:C` #> [1] "RVVZD" "VLFGJ" "OIEYP" "XCNMA" "TNEZM" "EIEMM" "JZQCZ" "KJHEO" "QAGKJ" #> [10] "FUGRT" "JJVZS" "CXUZH" "YZCRQ" "KRZUH" "SABYO" "ZHWZB" "JRDPA" "YXVYY" #> [19] "HTDIJ" "PQXCE" "OHSIB" "MWIDH" "LLOEP" "NVZMU" "OOEXB" "JOEHG" "KRPAE" #> [28] "YMTXG" "EHOZF" "QVOSJ" "ZKXTG" "QYSXT" "MUPOH" "SLPUT" "JJHYS" "OUSUY" #> [37] "SFJFI" "NNUXG" "ITROK" "IJZMQ" "GFYPZ" "HNXOK" "CVNNM" "XTWSG" "VBDEY" #> [46] "EDOEK" "KUXDB" "MRTRS" "UIBXS" "KUEEF" "SIWMJ" "QANBM" "TDAXO" "LMADF" #> [55] "OLWSK" "RHYGO" "PPAJR" "XJFSQ" "XBTRL" "BNRNI" "JKXOQ" "KONHI" "QSVYN" #> [64] "IMBEO" "FKKXU" "AVAOC" "ZUEHW" "GJGPD" "OMYAP" "QHZTH" "PIEKJ" "GVFRN" #> [73] "NWAPA" "PSTDQ" "RIGEM" "NAAGM" "XFXPW" "RKVBZ" "UTTHI" "SSYEZ" "XCMJL" #> [82] "MVAZY" "CPGNC" "LAGHX" "NICDN" "VRZAV" #> #> $`B:D` #> [1] "FXVQY" "SUHYR" "WFMVD" "JMLGP" "WOUJH" "RSAVL" "CYSVI" "NTTAV" "LYYBV" #> [10] "XZGEN" "ZBDZX" "FEOJA" "BRHKR" "DJLHU" "OBLUC" "TVXFM" "FIWCF" "YYGCY" #> [19] "CILHD" "KTPUX" "QCDQO" "NNITQ" "EANKE" "XTSPI" "NYTZB" "PULJB" "DUCUP" #> [28] "WPODU" "HZHRE" "VPHBR" "HBRBU" "IHTJY" "MKLKL" "THMEW" "SMWSN" "RYSSB" #> [37] "UJYGF" "MDPSX" "VXBYG" "QHHJL" "PMJTE" "HSNVF" "LFENA" "ZTSKQ" "RJZID" #> [46] "KGLHU" "IROWO" "FQSSV" "KBSMW" "HTUQZ" "BUWVX" "GMEIS" "RVJXU" "FIIDX" #> [55] "LEXUS" "JZPQG" "QQHLH" "CDCLI" "ZVNSS" "IMMMW" "CGJJW" "RBWDD" "IXPVR" #> [64] "BXGZG" "AZGKM" "CGVUY" "CFOLW" "ICUDD" "QYVHD" "DNMCP" "HPQIZ" "JMHVY" #> [73] "NNOFC" "FKAKN" "ANCSV" "GYTQE" "FEHPV" "NFIJG" "JWCVN" "PBJUZ" "ZWAXW" #> [82] "XGAIE" "ZTZQN" "XHHGN" "UUEZG" "SEPHM" "EZFPW" "NOTTT" "TCZFY" "PXWLG" #> [91] "QNFRJ" "HTMMA" "ILKLS" "BBPBK" "FXUOM" "BKIAJ" "HXLQP" "XVSXL" "BOEOS" #> [100] "ZKMWK" #> #> $`C:D` #> [1] "RLGIV" "VEHVJ" "WFOEH" "DGXDI" "OMFNZ" "PTPEB" "XFISS" "FKSKP" "WNKAY" #> [10] "LRYYN" "PMITG" "UENSU" "NWEMI" #> #> $`A:B:C` #> [1] "PJDAK" "YERZG" "VTDFY" "XNMLQ" "CTXQJ" "ZFQSC" "NLCGE" "CAEPI" "THFVD" #> [10] "QCQYM" "MGYFU" "ZLSYT" "CQFRD" "DTUNJ" "DEJHX" "JTHVY" "BQPMG" "FLVAN" #> [19] "SLTBK" "QUIYZ" "RWQRC" "VRCUY" "LOXNJ" "LGEZW" "WMDQQ" "MTFZZ" "FTQQY" #> [28] "IIMDF" "ZLXCO" "VSVKU" "DQAQJ" "HFGFP" "TQZGP" "RGUOJ" "YYBEN" "GLOQV" #> [37] "ABUCB" "ASMJV" "QZHIM" "UGTLY" "YZJRC" "PKMTY" "KNMST" "MTLXT" "NTTIS" #> [46] "PEGKE" "GHFFA" "MRIGY" "IMGXL" #> #> $`A:B:D` #> [1] "FFNWH" "IJJRE" "FQPYR" "BLBGS" "NOVTT" "VTTWS" "EETXA" "VLYNP" "REHJC" #> [10] "REPUE" "CAFSA" "FJIDR" "XBHHA" "RWCFT" "KJQIL" "TDKDI" "SWCZP" "BLQZQ" #> [19] "GFJIZ" "VKIZK" "DWCPR" "LDVDJ" "XJMPD" "EBETB" "TUFEN" "CQCXI" "AKDQI" #> [28] "KLUNS" "ARPIW" "XKVWP" "ZFZFA" "QURGV" "XSCCN" "FSQSO" "PIBAW" "BUWLA" #> [37] "YSRVC" "AQWMD" "ACHTF" "FTIPT" "GWWLE" "VBSCC" "ABEMT" "TOFMJ" "NSRJR" #> [46] "OKOFY" "SQZXR" "REGHA" "TSZEW" "HWFMB" "QGZJS" "NDVLC" "PESCC" "JUOBX" #> [55] "KMQCB" "FWEPE" "CVRZH" "TCUQK" "PCSXL" "LKHAF" "QBOOQ" "VKYIE" "TCCXT" #> [64] "LZQQQ" "RBMMS" "RVXBP" #> #> $`A:C:D` #> [1] "GTHER" "ZZEFR" "XLRET" "SAJSX" "RGCQE" "OKSVU" "LSJDC" "RLCTQ" "RTOTK" #> #> $`B:C:D` #> [1] "BNPBF" "PXEPS" "UOFIO" "BXCSG" "AHJEA" "WJOEZ" "HMWMO" "SSJDC" "LRNQE" #> [10] "NBFXV" "OQNBT" "OEDTK" "SJIFG" "VJNKZ" "MVTRS" "LIQPH" "CJJQS" "CENUC" #> [19] "CWFIT" "DQBSD" "XIMOT" "LDXKS" "LPADU" "YCLDK" "KPDFM" "MXKFQ" "OWIGJ" #> [28] "TBRWY" "URFHN" "NNPXR" #> #> $`A:B:C:D` #> [1] "SHIPQ" "LAPDM" "VALVS" "TILQM" "GBZRN" "MSOYN" "TWLSW" "TRVNP" "KIUTG" #> [10] "NFRZT" "CHHZV" "DCKWJ" "CAWDQ" "TXMHX" "BDLQC" "AECDH" "RHCYI" "JPMVL" #> [19] "XMLCQ" "KWBFR" #>## ## Example using a list of item indexes belonging to the ## specified group. ## GroupA.i <- which(geneNames %in% GroupA) GroupB.i <- which(geneNames %in% GroupB) GroupC.i <- which(geneNames %in% GroupC) GroupD.i <- which(geneNames %in% GroupD) input.i <-list(A=GroupA.i,B=GroupB.i,C=GroupC.i,D=GroupD.i) input.i#> $A #> [1] 4 5 6 8 9 13 17 20 22 23 28 30 33 35 36 39 40 43 #> [19] 45 49 50 55 59 60 66 67 72 75 76 77 82 86 88 89 92 97 #> [37] 98 99 100 101 104 109 110 115 117 118 120 122 124 125 126 130 131 133 #> [55] 137 142 146 148 149 151 155 156 157 158 160 166 170 175 176 177 178 179 #> [73] 185 186 188 189 193 194 196 198 199 200 204 205 206 207 208 212 214 216 #> [91] 217 219 225 226 227 229 230 232 236 240 241 242 243 249 255 259 260 261 #> [109] 263 267 273 274 275 278 279 280 281 282 287 289 293 296 305 308 312 314 #> [127] 315 317 320 321 322 324 327 329 330 333 334 335 337 338 340 343 344 345 #> [145] 351 353 356 362 366 370 371 373 374 377 379 381 382 384 386 389 392 396 #> [163] 406 410 411 414 416 419 422 424 425 426 428 432 433 434 435 438 441 444 #> [181] 446 447 448 449 451 457 460 462 464 466 467 468 470 471 472 473 475 476 #> [199] 478 479 480 481 483 485 489 492 495 497 498 499 500 501 503 505 508 509 #> [217] 514 521 524 527 536 537 540 542 543 545 546 548 550 556 558 561 565 569 #> [235] 571 572 575 582 585 586 587 592 594 595 603 604 607 609 613 618 619 620 #> [253] 621 622 623 624 627 631 634 637 638 642 643 644 651 653 656 657 661 666 #> [271] 669 671 672 673 674 675 676 678 680 682 685 686 690 695 704 707 708 711 #> [289] 712 714 715 717 718 719 721 723 726 727 730 734 735 737 738 740 741 744 #> [307] 746 748 749 753 754 755 757 760 763 766 769 771 772 773 780 784 785 788 #> [325] 790 791 798 803 808 809 812 814 817 818 826 827 829 830 832 834 835 837 #> [343] 838 839 840 844 845 847 851 852 855 856 857 869 873 874 877 878 882 887 #> [361] 888 892 894 895 896 899 900 904 907 909 910 911 920 930 933 936 944 945 #> [379] 946 949 951 955 959 960 962 965 966 969 972 974 976 979 981 983 984 986 #> [397] 991 992 994 999 #> #> $B #> [1] 2 3 4 6 7 8 10 11 12 13 14 15 16 17 18 #> [16] 19 21 22 23 24 25 26 27 28 29 30 36 37 38 40 #> [31] 41 42 43 44 45 46 47 48 49 50 51 52 53 57 59 #> [46] 60 61 62 63 64 65 66 69 70 72 73 75 76 77 80 #> [61] 81 82 83 85 86 88 89 90 91 92 93 95 98 99 100 #> [76] 101 107 108 109 110 112 113 114 115 117 118 120 121 123 124 #> [91] 125 126 127 129 130 132 133 134 135 136 139 141 142 143 144 #> [106] 145 146 147 149 151 153 154 155 156 157 159 160 161 165 166 #> [121] 168 169 170 171 172 173 174 175 176 178 179 181 186 187 188 #> [136] 190 191 192 193 195 198 199 200 202 203 204 205 206 208 210 #> [151] 212 213 214 215 217 218 219 220 221 222 224 226 227 230 231 #> [166] 232 233 234 235 236 237 239 242 243 244 245 247 251 253 254 #> [181] 255 256 257 258 259 260 261 262 263 264 265 267 268 270 271 #> [196] 272 273 276 277 278 279 280 281 283 284 285 288 290 292 293 #> [211] 296 297 298 299 300 301 302 303 304 307 308 309 310 312 313 #> [226] 314 317 318 319 320 321 322 323 324 325 328 330 331 332 333 #> [241] 334 335 336 337 339 341 343 344 345 346 348 349 351 353 355 #> [256] 356 357 358 359 360 361 364 365 366 367 368 369 370 371 372 #> [271] 373 374 377 379 380 383 384 385 386 387 388 389 390 392 393 #> [286] 394 395 396 399 400 401 402 403 404 405 406 407 408 409 410 #> [301] 411 413 414 416 417 418 419 421 422 425 426 427 428 429 431 #> [316] 434 435 436 437 438 439 440 441 443 444 445 447 450 455 456 #> [331] 459 460 461 462 463 465 466 467 468 470 471 472 473 475 476 #> [346] 477 478 479 481 483 484 485 486 487 489 490 491 492 494 495 #> [361] 496 497 498 502 503 504 506 507 510 511 513 514 515 517 518 #> [376] 519 520 521 522 523 524 527 528 529 530 531 532 534 535 536 #> [391] 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 #> [406] 553 554 555 556 557 558 560 563 564 565 566 567 568 569 570 #> [421] 572 573 574 575 576 578 579 580 582 583 587 588 589 590 591 #> [436] 592 593 594 595 596 599 600 601 602 603 604 605 607 609 611 #> [451] 612 613 614 615 617 619 620 621 622 624 625 627 628 630 632 #> [466] 633 635 636 638 639 640 641 642 643 644 645 647 648 649 650 #> [481] 651 652 654 655 656 657 660 662 663 664 666 667 668 669 670 #> [496] 671 672 674 675 676 677 678 684 685 686 688 689 690 691 692 #> [511] 693 694 695 696 697 698 699 700 701 702 704 705 706 707 708 #> [526] 711 712 713 715 716 717 719 720 721 723 724 725 726 727 728 #> [541] 729 730 731 734 735 736 739 742 743 744 745 746 747 748 749 #> [556] 750 751 753 754 756 757 758 760 761 762 765 767 768 769 770 #> [571] 772 773 774 775 776 777 778 780 781 782 783 784 785 786 788 #> [586] 790 791 792 793 795 796 797 798 799 800 801 803 804 805 806 #> [601] 808 809 810 811 812 813 814 815 816 818 820 821 822 823 826 #> [616] 827 828 829 830 831 832 833 834 836 837 838 840 841 842 843 #> [631] 844 846 847 848 849 850 851 852 853 854 855 857 858 859 860 #> [646] 861 862 863 864 865 867 868 869 870 871 872 874 875 876 879 #> [661] 880 881 882 883 886 888 889 892 893 894 895 897 898 899 900 #> [676] 901 902 903 904 905 906 907 909 910 911 914 915 916 917 919 #> [691] 920 921 922 923 924 926 927 929 930 931 932 934 935 939 940 #> [706] 941 942 943 944 945 946 947 948 949 951 952 953 954 958 961 #> [721] 962 964 965 966 967 968 969 971 974 975 977 978 979 980 983 #> [736] 984 986 987 988 989 990 991 992 994 995 996 997 998 999 1000 #> #> $C #> [1] 1 2 11 26 30 31 34 35 36 37 41 51 52 54 57 #> [16] 59 60 66 67 68 71 73 74 76 79 83 93 94 99 104 #> [31] 105 112 113 114 118 122 134 136 141 142 145 146 149 150 152 #> [46] 158 160 185 187 191 195 196 199 207 208 209 211 213 217 225 #> [61] 230 237 238 256 257 258 262 264 270 274 277 286 296 302 304 #> [76] 305 308 314 317 318 320 333 334 335 343 347 349 360 363 365 #> [91] 368 379 386 390 392 393 394 395 397 398 400 404 405 409 413 #> [106] 416 420 422 423 424 427 433 436 437 439 455 458 459 463 465 #> [121] 469 472 474 480 481 491 492 495 500 504 506 507 508 511 512 #> [136] 513 514 527 528 529 533 535 536 538 540 541 546 547 549 552 #> [151] 553 560 562 564 566 575 577 578 579 580 593 594 600 609 610 #> [166] 611 617 621 622 625 632 634 638 640 641 645 646 654 655 663 #> [181] 665 667 672 673 678 687 697 700 705 706 717 720 723 727 729 #> [196] 737 738 739 743 748 760 778 780 784 785 788 790 791 792 805 #> [211] 806 811 825 826 834 835 841 842 851 852 855 857 861 862 866 #> [226] 868 870 872 878 880 884 889 905 911 923 929 930 948 955 956 #> [241] 961 969 970 976 982 984 985 986 993 1000 #> #> $D #> [1] 4 5 7 16 18 19 20 23 35 42 43 47 48 52 58 #> [16] 59 64 65 71 81 90 94 96 99 101 106 108 112 113 115 #> [31] 116 119 120 121 125 128 132 133 138 140 142 144 146 148 155 #> [46] 156 157 164 165 169 172 173 178 183 188 190 192 196 200 207 #> [61] 208 209 210 213 217 228 233 234 236 237 240 241 242 243 246 #> [76] 250 257 259 260 261 266 269 270 272 276 277 279 281 289 291 #> [91] 294 300 307 313 314 317 321 325 329 330 334 339 343 348 350 #> [106] 351 363 364 375 381 384 387 392 396 397 400 413 414 417 423 #> [121] 424 425 426 433 440 441 445 449 451 453 458 459 469 470 473 #> [136] 479 480 484 489 490 500 505 510 516 522 529 537 544 547 551 #> [151] 561 562 564 566 576 579 581 583 584 587 591 593 601 604 607 #> [166] 608 610 611 612 618 620 621 622 625 627 632 634 635 637 638 #> [181] 639 643 646 651 652 657 658 659 667 671 675 677 679 681 688 #> [196] 689 694 696 699 700 707 720 723 725 726 728 730 733 736 750 #> [211] 754 755 757 758 759 764 767 768 770 772 774 776 779 785 788 #> [226] 790 791 792 793 794 796 798 801 804 808 811 812 814 815 817 #> [241] 820 824 826 827 829 831 833 835 841 843 844 846 848 849 859 #> [256] 860 862 864 868 869 873 874 877 881 882 884 885 887 890 891 #> [271] 893 895 897 903 906 908 909 910 917 919 925 931 932 935 937 #> [286] 940 945 949 950 952 958 961 967 973 975 980 985 987 995 1000 #>venn(input.i)## ## Example using a data frame of indicator ('f'lag) columns ## GroupA.f <- geneNames %in% GroupA GroupB.f <- geneNames %in% GroupB GroupC.f <- geneNames %in% GroupC GroupD.f <- geneNames %in% GroupD input.df <- data.frame(A=GroupA.f,B=GroupB.f,C=GroupC.f,D=GroupD.f) head(input.df)#> A B C D #> 1 FALSE FALSE TRUE FALSE #> 2 FALSE TRUE TRUE FALSE #> 3 FALSE TRUE FALSE FALSE #> 4 TRUE TRUE FALSE TRUE #> 5 TRUE FALSE FALSE TRUE #> 6 TRUE TRUE FALSE FALSEvenn(input.df) ## smaller set to create empty groupings small <- input.df[1:20,] venn(small, simplify=FALSE) # with empty groupingsvenn(small, simplify=TRUE) # without empty groupings#> Warning: Not shown: 0101 contains 4## Capture group counts, but don't plot tmp <- venn(input, show.plot=FALSE) tmp#> num A B C D #> 0000 0 0 0 0 0 #> 0001 42 0 0 0 1 #> 0010 28 0 0 1 0 #> 0011 13 0 0 1 1 #> 0100 234 0 1 0 0 #> 0101 100 0 1 0 1 #> 0110 86 0 1 1 0 #> 0111 30 0 1 1 1 #> 1000 56 1 0 0 0 #> 1001 20 1 0 0 1 #> 1010 15 1 0 1 0 #> 1011 9 1 0 1 1 #> 1100 165 1 1 0 0 #> 1101 66 1 1 0 1 #> 1110 49 1 1 1 0 #> 1111 20 1 1 1 1 #> attr(,"intersections") #> attr(,"intersections")$A #> [1] "RIOLM" "UCCWI" "GZQZM" "UEWSV" "WKUPX" "CPFTV" "JCIDI" "FHWLJ" "QIVKH" #> [10] "RXWMV" "NTSKM" "NRKXT" "OHKPP" "SSQMS" "YTLNJ" "LSGRC" "TQGJB" "RGKIA" #> [19] "HXKMK" "OYLFM" "HWLNL" "NNHTV" "CQIMT" "NSKHG" "ZUUYV" "GSSQG" "AVBXA" #> [28] "CAQVR" "LUYHW" "UPMLR" "NHOZP" "TKAEU" "VVNNS" "NQKHR" "TVYYJ" "ZVMPS" #> [37] "TFSET" "BOAWV" "HWFUN" "WBFWJ" "EEKPP" "KAPCQ" "IKZUW" "RKQRB" "EFGQT" #> [46] "YLKRA" "UURZW" "IDUGD" "CTTEQ" "BHZPH" "EWTBX" "YKRMH" "GGCEX" "LFYLT" #> [55] "LODJK" "XDIPD" #> #> attr(,"intersections")$B #> [1] "AORUB" "PPYOH" "JIFKL" "HIAQL" "OFCZV" "CZQBG" "XMVVN" "TRJRB" "GWGPA" #> [10] "EUCTP" "MBZRN" "EKUYW" "QOHIZ" "QGNEQ" "UXDGX" "OKKFP" "ASQJQ" "AFHPT" #> [19] "LGMZK" "EAHUB" "KFRHL" "OUAVE" "GVOQL" "NZADX" "PKNFK" "PSZIE" "LZNOY" #> [28] "PAYBP" "DATCW" "CVHIX" "UPSEF" "GQOWT" "SZOUJ" "FCQYQ" "VNWVW" "ONATZ" #> [37] "OCWEK" "RFYJH" "DRXHH" "ANXQH" "HOGTN" "PJCDV" "ECCFP" "SCPLR" "LNNKZ" #> [46] "XCCXU" "VXXYJ" "ZBUCK" "JJNZB" "MANBN" "SPAIS" "BZQPN" "EUMIW" "YBYXE" #> [55] "BADKD" "ZNPHZ" "MSIJK" "GGQQF" "VMYYC" "RQLER" "OKAUH" "SOFSM" "YJYTM" #> [64] "WTIWO" "WDKJP" "CENDF" "XPIMA" "SGAGM" "VQGRC" "IMGSX" "MANTZ" "OAOBG" #> [73] "YQMJC" "WGKSP" "JYGAI" "BJDFG" "NQLUG" "KGXCA" "WJCFD" "QZQKF" "QGYBK" #> [82] "AQRRA" "VWKZJ" "UZBWI" "BMNHB" "VQHER" "LOUTU" "MWPJJ" "NOGVM" "ZTOBO" #> [91] "XCXTQ" "LQODV" "ANMYA" "NMRUD" "QGVPU" "MKUQK" "KGMIP" "PCCRX" "EFNIB" #> [100] "HIXMT" "OQWRF" "YMGRW" "BEXON" "KQCNM" "HLWPY" "GAXSN" "ECBUW" "JZWJF" #> [109] "BAZUG" "ZUIHY" "GCXHG" "AXYCM" "OQATO" "UXGHW" "LUIBK" "MIVAL" "PJYUF" #> [118] "WAZFP" "NWOKR" "BLVKE" "HISPZ" "YHLDV" "WYFRA" "YLIGE" "SOZOK" "CCGTT" #> [127] "RYSVI" "SNAKS" "OHSRN" "UCNJQ" "CFZHA" "MFGMD" "FPARL" "SKSDX" "UFFAA" #> [136] "GSPOT" "EAIPH" "UIRPS" "YNNWY" "LCVOU" "QMALB" "GUBHT" "FUVPX" "NGMXH" #> [145] "TACJD" "MLZPB" "JHKBA" "KNDMB" "KZEMN" "AEBKV" "TEBUJ" "VLQGX" "IEICM" #> [154] "KPKPJ" "XCBJB" "IVJSO" "YQPFK" "IOILU" "NDUFF" "JIYDO" "VZQXC" "KIYIF" #> [163] "VMWNN" "EOVJH" "KIEEG" "HUMNR" "GDURJ" "SMXHI" "ZPSNG" "ASCTA" "DMCLQ" #> [172] "AMQCT" "DEXEN" "HUBNU" "JGLPO" "ZZOJE" "HGXHF" "ZDUNX" "QVIER" "APIJB" #> [181] "IXWHA" "FVAJV" "JNQTO" "GMKRS" "ALAAW" "CFAOO" "ILMMA" "WCWCY" "TUMDX" #> [190] "ESLXC" "UDDQN" "JFDES" "DNWAO" "OSIWO" "YVESI" "OYXBM" "FCZKS" "KQNCX" #> [199] "XZYXY" "FGMSY" "RTAQC" "DPOFW" "RSBES" "ANDWR" "PKVNI" "EDAJP" "BMPAP" #> [208] "XXEWB" "HKDQR" "KZXDT" "BWBHM" "PSENI" "EZWMZ" "ZCALK" "EVZVY" "DVYQK" #> [217] "MHAST" "WFPZM" "IVSAF" "FBYWQ" "GMLSK" "GDOEG" "TZADP" "TWYWO" "TKPGE" #> [226] "KMLIB" "NFLQC" "YUFBP" "DRRFY" "OLPXP" "NHMPB" "RERWZ" "AHPXC" "JDLBE" #> #> attr(,"intersections")$C #> [1] "XANPQ" "XXLXR" "LVPBM" "VMNMC" "TOPBW" "EFYUO" "HCOKT" "EESZJ" "NDFRZ" #> [10] "TKSPP" "WSADN" "DZQHW" "BCSJF" "OQWPE" "YGFLL" "MUASG" "METQI" "EVQLX" #> [19] "NHHGE" "RZRBQ" "WMSKJ" "DSNYH" "NKIZL" "GFHEG" "XZYCL" "ZUVZX" "EUUJG" #> [28] "CQDWL" #> #> attr(,"intersections")$D #> [1] "JXSLX" "GQANJ" "JSKLK" "ESOTI" "ETDVO" "WUQME" "HQDOE" "HDGRH" "NQFJX" #> [10] "FGLMK" "VYOJL" "IJWPG" "KSNSW" "WGCRR" "EOLQM" "SIRFE" "TDDWL" "KXNJZ" #> [19] "PAIDF" "QMZNA" "WVJGI" "XVRYM" "FUBDA" "KXEAA" "WLDPP" "PNIYQ" "UDRJH" #> [28] "LFCDH" "CCSFB" "NBIHL" "VVZZO" "LNWZE" "YGNDE" "WZXBY" "IDEXK" "RNDVA" #> [37] "TFAFB" "RSBQZ" "MTNPQ" "AETJY" "BJLGH" "XRTGH" #> #> attr(,"intersections")$`A:B` #> [1] "YMIII" "TGRSB" "EDQGT" "JSWWK" "UYLOB" "RMAEP" "VBTNM" "VXQWD" "JQKSZ" #> [10] "JJKNI" "QPMWC" "XTRKL" "EEGGG" "FSGGO" "QGTDI" "AXDMY" "JBXRU" "EDSRI" #> [19] "FSFWT" "VQLTJ" "HPMVK" "EXHLU" "PEQCJ" "ATLMY" "DKHEL" "SBIEA" "MMQSM" #> [28] "VYNOG" "YMCMZ" "RLPYL" "IKKZA" "OGBDE" "AHDRZ" "CMTPQ" "ZFSGS" "XEIML" #> [37] "FRWGN" "EDVLI" "DEJXH" "NUGIR" "CTQAH" "YGHYR" "NJTFO" "VKNMJ" "NJAAF" #> [46] "OGJBW" "VEUTP" "BPYQN" "MYOHQ" "IMKMQ" "ILCPG" "OPZDH" "XEUKR" "QLIDJ" #> [55] "SMXKI" "LPUDQ" "IITIH" "DZESC" "XRWLY" "LKPNQ" "GNADE" "WSWRG" "ZYNUB" #> [64] "PNFVW" "YZEGX" "VFMUP" "OBEEH" "GVSWW" "QBATS" "NQFKN" "ZULKL" "UGEQR" #> [73] "XLAZZ" "HVVJY" "EXADT" "YXLER" "NDLWN" "WVEAX" "KFQEN" "KWSVW" "PKSFY" #> [82] "GJMOI" "AHKEN" "UUABD" "HBCKT" "MSBLF" "FPCEU" "PUFUS" "RUQLK" "SECSL" #> [91] "NTEPI" "AWAOB" "SIMFZ" "FHNTU" "PRTPE" "YBBNB" "IIXXE" "GCCNI" "TIHWF" #> [100] "FBVKW" "XGTPM" "RFYGE" "BBMST" "QDPNF" "NQCQW" "KPZES" "WYGZV" "NFSGU" #> [109] "MUYCQ" "CYXUZ" "MELKZ" "TVUKT" "DVSVN" "OEFPV" "YAVVE" "JBVGX" "QHANP" #> [118] "XQCFD" "TPUBB" "MJIEP" "CDHIU" "JMLIJ" "DIUCE" "ZCEQT" "CNIGR" "IQLDM" #> [127] "CASZE" "BPQZG" "ZGZGI" "VOJBR" "ZWTTH" "PSIUX" "XUOUB" "XODZH" "BUSUE" #> [136] "LTWFM" "CNWHB" "NXDPR" "DBENV" "LIDPN" "PHGRU" "JDTNH" "TMRSS" "VFDLE" #> [145] "OINFR" "KYRJQ" "LBLJX" "UPYMG" "VEWNH" "SRVEG" "PURYK" "JFXKH" "BSOVT" #> [154] "XTDCZ" "XEFBQ" "ELCJJ" "MKQSV" "BUMEC" "ULCKN" "OOFAL" "JYTWP" "GFYZG" #> [163] "XLHWL" "KJXHG" "MGPFN" #> #> attr(,"intersections")$`A:C` #> [1] "DLXKU" "UHDMH" "WNCBJ" "XFRMN" "JGOFD" "AZZNR" "ZZNBK" "HUYMF" "NDIUI" #> [10] "PMRKN" "NDRUX" "LMZAH" "FQTJD" "SGPJB" "PHWGC" #> #> attr(,"intersections")$`A:D` #> [1] "QQAJB" "QBCLV" "RILGB" "ADVQM" "ELGUI" "DEVMB" "MILSE" "BOEWQ" "CFUVR" #> [10] "ENYGM" "JETOX" "XIOEJ" "UGDLC" "QQIXI" "DUKGW" "WAICA" "NNQKY" "DPURT" #> [19] "UKZTO" "IRBGU" #> #> attr(,"intersections")$`B:C` #> [1] "RVVZD" "VLFGJ" "OIEYP" "XCNMA" "TNEZM" "EIEMM" "JZQCZ" "KJHEO" "QAGKJ" #> [10] "FUGRT" "JJVZS" "CXUZH" "YZCRQ" "KRZUH" "SABYO" "ZHWZB" "JRDPA" "YXVYY" #> [19] "HTDIJ" "PQXCE" "OHSIB" "MWIDH" "LLOEP" "NVZMU" "OOEXB" "JOEHG" "KRPAE" #> [28] "YMTXG" "EHOZF" "QVOSJ" "ZKXTG" "QYSXT" "MUPOH" "SLPUT" "JJHYS" "OUSUY" #> [37] "SFJFI" "NNUXG" "ITROK" "IJZMQ" "GFYPZ" "HNXOK" "CVNNM" "XTWSG" "VBDEY" #> [46] "EDOEK" "KUXDB" "MRTRS" "UIBXS" "KUEEF" "SIWMJ" "QANBM" "TDAXO" "LMADF" #> [55] "OLWSK" "RHYGO" "PPAJR" "XJFSQ" "XBTRL" "BNRNI" "JKXOQ" "KONHI" "QSVYN" #> [64] "IMBEO" "FKKXU" "AVAOC" "ZUEHW" "GJGPD" "OMYAP" "QHZTH" "PIEKJ" "GVFRN" #> [73] "NWAPA" "PSTDQ" "RIGEM" "NAAGM" "XFXPW" "RKVBZ" "UTTHI" "SSYEZ" "XCMJL" #> [82] "MVAZY" "CPGNC" "LAGHX" "NICDN" "VRZAV" #> #> attr(,"intersections")$`B:D` #> [1] "FXVQY" "SUHYR" "WFMVD" "JMLGP" "WOUJH" "RSAVL" "CYSVI" "NTTAV" "LYYBV" #> [10] "XZGEN" "ZBDZX" "FEOJA" "BRHKR" "DJLHU" "OBLUC" "TVXFM" "FIWCF" "YYGCY" #> [19] "CILHD" "KTPUX" "QCDQO" "NNITQ" "EANKE" "XTSPI" "NYTZB" "PULJB" "DUCUP" #> [28] "WPODU" "HZHRE" "VPHBR" "HBRBU" "IHTJY" "MKLKL" "THMEW" "SMWSN" "RYSSB" #> [37] "UJYGF" "MDPSX" "VXBYG" "QHHJL" "PMJTE" "HSNVF" "LFENA" "ZTSKQ" "RJZID" #> [46] "KGLHU" "IROWO" "FQSSV" "KBSMW" "HTUQZ" "BUWVX" "GMEIS" "RVJXU" "FIIDX" #> [55] "LEXUS" "JZPQG" "QQHLH" "CDCLI" "ZVNSS" "IMMMW" "CGJJW" "RBWDD" "IXPVR" #> [64] "BXGZG" "AZGKM" "CGVUY" "CFOLW" "ICUDD" "QYVHD" "DNMCP" "HPQIZ" "JMHVY" #> [73] "NNOFC" "FKAKN" "ANCSV" "GYTQE" "FEHPV" "NFIJG" "JWCVN" "PBJUZ" "ZWAXW" #> [82] "XGAIE" "ZTZQN" "XHHGN" "UUEZG" "SEPHM" "EZFPW" "NOTTT" "TCZFY" "PXWLG" #> [91] "QNFRJ" "HTMMA" "ILKLS" "BBPBK" "FXUOM" "BKIAJ" "HXLQP" "XVSXL" "BOEOS" #> [100] "ZKMWK" #> #> attr(,"intersections")$`C:D` #> [1] "RLGIV" "VEHVJ" "WFOEH" "DGXDI" "OMFNZ" "PTPEB" "XFISS" "FKSKP" "WNKAY" #> [10] "LRYYN" "PMITG" "UENSU" "NWEMI" #> #> attr(,"intersections")$`A:B:C` #> [1] "PJDAK" "YERZG" "VTDFY" "XNMLQ" "CTXQJ" "ZFQSC" "NLCGE" "CAEPI" "THFVD" #> [10] "QCQYM" "MGYFU" "ZLSYT" "CQFRD" "DTUNJ" "DEJHX" "JTHVY" "BQPMG" "FLVAN" #> [19] "SLTBK" "QUIYZ" "RWQRC" "VRCUY" "LOXNJ" "LGEZW" "WMDQQ" "MTFZZ" "FTQQY" #> [28] "IIMDF" "ZLXCO" "VSVKU" "DQAQJ" "HFGFP" "TQZGP" "RGUOJ" "YYBEN" "GLOQV" #> [37] "ABUCB" "ASMJV" "QZHIM" "UGTLY" "YZJRC" "PKMTY" "KNMST" "MTLXT" "NTTIS" #> [46] "PEGKE" "GHFFA" "MRIGY" "IMGXL" #> #> attr(,"intersections")$`A:B:D` #> [1] "FFNWH" "IJJRE" "FQPYR" "BLBGS" "NOVTT" "VTTWS" "EETXA" "VLYNP" "REHJC" #> [10] "REPUE" "CAFSA" "FJIDR" "XBHHA" "RWCFT" "KJQIL" "TDKDI" "SWCZP" "BLQZQ" #> [19] "GFJIZ" "VKIZK" "DWCPR" "LDVDJ" "XJMPD" "EBETB" "TUFEN" "CQCXI" "AKDQI" #> [28] "KLUNS" "ARPIW" "XKVWP" "ZFZFA" "QURGV" "XSCCN" "FSQSO" "PIBAW" "BUWLA" #> [37] "YSRVC" "AQWMD" "ACHTF" "FTIPT" "GWWLE" "VBSCC" "ABEMT" "TOFMJ" "NSRJR" #> [46] "OKOFY" "SQZXR" "REGHA" "TSZEW" "HWFMB" "QGZJS" "NDVLC" "PESCC" "JUOBX" #> [55] "KMQCB" "FWEPE" "CVRZH" "TCUQK" "PCSXL" "LKHAF" "QBOOQ" "VKYIE" "TCCXT" #> [64] "LZQQQ" "RBMMS" "RVXBP" #> #> attr(,"intersections")$`A:C:D` #> [1] "GTHER" "ZZEFR" "XLRET" "SAJSX" "RGCQE" "OKSVU" "LSJDC" "RLCTQ" "RTOTK" #> #> attr(,"intersections")$`B:C:D` #> [1] "BNPBF" "PXEPS" "UOFIO" "BXCSG" "AHJEA" "WJOEZ" "HMWMO" "SSJDC" "LRNQE" #> [10] "NBFXV" "OQNBT" "OEDTK" "SJIFG" "VJNKZ" "MVTRS" "LIQPH" "CJJQS" "CENUC" #> [19] "CWFIT" "DQBSD" "XIMOT" "LDXKS" "LPADU" "YCLDK" "KPDFM" "MXKFQ" "OWIGJ" #> [28] "TBRWY" "URFHN" "NNPXR" #> #> attr(,"intersections")$`A:B:C:D` #> [1] "SHIPQ" "LAPDM" "VALVS" "TILQM" "GBZRN" "MSOYN" "TWLSW" "TRVNP" "KIUTG" #> [10] "NFRZT" "CHHZV" "DCKWJ" "CAWDQ" "TXMHX" "BDLQC" "AECDH" "RHCYI" "JPMVL" #> [19] "XMLCQ" "KWBFR" #> #> attr(,"class") #> [1] "venn"## Show internal binary group labels venn(input, showSetLogicLabel=TRUE)## Limit universe tmp <- venn(input, universe=geneNames[1:100])tmp#> num A B C D #> 0000 5 0 0 0 0 #> 0001 2 0 0 0 1 #> 0010 7 0 0 1 0 #> 0011 2 0 0 1 1 #> 0100 23 0 1 0 0 #> 0101 11 0 1 0 1 #> 0110 10 0 1 1 0 #> 0111 1 0 1 1 1 #> 1000 5 1 0 0 0 #> 1001 2 1 0 0 1 #> 1010 1 1 0 1 0 #> 1011 1 1 0 1 1 #> 1100 20 1 1 0 0 #> 1101 3 1 1 0 1 #> 1110 5 1 1 1 0 #> 1111 2 1 1 1 1 #> attr(,"intersections") #> attr(,"intersections")[[1]] #> [1] "MYYDN" "WPAXQ" "ZRQEB" "AKWDQ" "SBBBV" #> #> attr(,"intersections")$A #> [1] "YKRMH" "YLKRA" "IKZUW" "XDIPD" "CPFTV" #> #> attr(,"intersections")$B #> [1] "GCXHG" "DEXEN" "CFZHA" "KQNCX" "FVAJV" "OHSRN" "OLPXP" "CENDF" "EUMIW" #> [10] "SPAIS" "ZBUCK" "TEBUJ" "JFDES" "EZWMZ" "BAZUG" "QMALB" "XCXTQ" "VZQXC" #> [19] "PKVNI" "HUBNU" "RFYJH" "TUMDX" "AMQCT" #> #> attr(,"intersections")$C #> [1] "METQI" "XXLXR" "NKIZL" "YGFLL" "NDFRZ" "VMNMC" "TKSPP" #> #> attr(,"intersections")$D #> [1] "GQANJ" "TDDWL" #> #> attr(,"intersections")$`A:B` #> [1] "OPZDH" "XEIML" "VQLTJ" "OINFR" "ILCPG" "QGTDI" "GNADE" "VYNOG" "PNFVW" #> [10] "ZGZGI" "ZFSGS" "HVVJY" "BSOVT" "DVSVN" "RFYGE" "XLHWL" "JFXKH" "FRWGN" #> [19] "FSGGO" "DKHEL" #> #> attr(,"intersections")$`A:C` #> [1] "PHWGC" #> #> attr(,"intersections")$`A:D` #> [1] "CFUVR" "QQAJB" #> #> attr(,"intersections")$`B:C` #> [1] "YMTXG" "VRZAV" "AVAOC" "JOEHG" "KUXDB" "VLFGJ" "VBDEY" "UTTHI" "MRTRS" #> [10] "JJVZS" #> #> attr(,"intersections")$`B:D` #> [1] "JMHVY" "JWCVN" "MKLKL" "ZWAXW" "WPODU" "BOEOS" "NNOFC" "FEHPV" "DJLHU" #> [10] "ZKMWK" "YYGCY" #> #> attr(,"intersections")$`C:D` #> [1] "PTPEB" "VEHVJ" #> #> attr(,"intersections")$`A:B:C` #> [1] "ASMJV" "GLOQV" "HFGFP" "ZLXCO" "QCQYM" #> #> attr(,"intersections")$`A:B:D` #> [1] "QURGV" "LZQQQ" "AKDQI" #> #> attr(,"intersections")$`A:C:D` #> [1] "SAJSX" #> #> attr(,"intersections")$`B:C:D` #> [1] "MXKFQ" #> #> attr(,"intersections")$`A:B:C:D` #> [1] "BDLQC" "TILQM" #> #> attr(,"class") #> [1] "venn"## ## Example to determine which elements are in A and B but not in ## C and D using the 'intersections' attribute. ## tmp <- venn(input, intersection=TRUE)#> List of 15 #> $ A : chr [1:56] "RIOLM" "UCCWI" "GZQZM" "UEWSV" ... #> $ B : chr [1:234] "AORUB" "PPYOH" "JIFKL" "HIAQL" ... #> $ C : chr [1:28] "XANPQ" "XXLXR" "LVPBM" "VMNMC" ... #> $ D : chr [1:42] "JXSLX" "GQANJ" "JSKLK" "ESOTI" ... #> $ A:B : chr [1:165] "YMIII" "TGRSB" "EDQGT" "JSWWK" ... #> $ A:C : chr [1:15] "DLXKU" "UHDMH" "WNCBJ" "XFRMN" ... #> $ A:D : chr [1:20] "QQAJB" "QBCLV" "RILGB" "ADVQM" ... #> $ B:C : chr [1:86] "RVVZD" "VLFGJ" "OIEYP" "XCNMA" ... #> $ B:D : chr [1:100] "FXVQY" "SUHYR" "WFMVD" "JMLGP" ... #> $ C:D : chr [1:13] "RLGIV" "VEHVJ" "WFOEH" "DGXDI" ... #> $ A:B:C : chr [1:49] "PJDAK" "YERZG" "VTDFY" "XNMLQ" ... #> $ A:B:D : chr [1:66] "FFNWH" "IJJRE" "FQPYR" "BLBGS" ... #> $ A:C:D : chr [1:9] "GTHER" "ZZEFR" "XLRET" "SAJSX" ... #> $ B:C:D : chr [1:30] "BNPBF" "PXEPS" "UOFIO" "BXCSG" ... #> $ A:B:C:D: chr [1:20] "SHIPQ" "LAPDM" "VALVS" "TILQM" ...# Extract and combine the subsets of interest.. AandB <- unique(c(isect$A, isect$B, isect$'A:B')) # and look at the results str(AandB)#> chr [1:455] "RIOLM" "UCCWI" "GZQZM" "UEWSV" "WKUPX" "CPFTV" "JCIDI" ...## ## The full set of elements of each intersection is provided in the ## "interesections" attribute. ## a<-venn(list(1:5,3:8), show.plot=FALSE) intersections<-attr(a,"intersections") print(intersections)#> $A #> [1] "1" "2" #> #> $B #> [1] "6" "7" "8" #> #> $`A:B` #> [1] "3" "4" "5" #># $A # [1] "1" "2" # # $B # [1] "6" "7" "8" # # $`A:B` # [1] "3" "4" "5"
